Open the downloaded zipped file and extract all files to a chosen folder. The manual showed number of loci and ploidy level in the infile with an inversion, this is corrected.īelow some technical information to use GenClone: I. The very rare alleles as considered as having a frequency p<(1/(ploidy x number of distinct MLG).Ī bug in the estimate of distances in terms of number of alleles occurred depending on the file format and has been fixed.Īutocorrelation with some number of distant classes resulted, without miscalculation, in the last classes not being represented (ie empty). GenClone 1.0 suffered a bug in the estimates of pgen(fis), due to the Round Robin methods under certain conditions (very rare alleles disappear from the allelic frequency estimates in this procedure, which is expected, but resulted in a bug in some cases) and this is now fixed. Īn ‘outfile.arp’ can be extracted with Arlequin format What changed in GenClone 1.1Ĭoherence of the data is now checked when opening each infile : when the number of individual and number of loci do not correspond to the number of columns and lines, an error message will inform user that the file should be corrected.Ĭentral coordinates are now estimated without the assumption that the transect starts at. Planned for the next version: change some activeX procedres in order to increase the maximum number of loci, presently 42 only. The procedure checking for missing data has been corrected and is now functional for datasets from haploid organisms. (2007) namely the Pareto distribution, spectrum of microsatellites distances, aggregation index and Edge efect index are now implemented The new features form Arnaud-Haond et al (in press in Molecular Ecology, doi: 10.1111/j.) and Rozenfeld et al. ↓ You can download GenClone 2.0 down page What changes from GenClone 1.1 to GenClone 2.0 Here, describing the software's features. Summarizes the spatial organization of MLGs with adapted spatial autocorrelation methods and clonal subrange estimates.Computes various indices describing genotypic diversity.Computes statistics to test for clonal propagation or clonal identity of replicates.(This is also useful for non-clonal organisms.) Discriminates distinct multilocus genotypes (MLGs), and uses permutation and re-sampling approaches to test for the reliability of sets of loci and sampling units for estimating genotypic and genetic diversity.GenClone 2.0 performs the following tasks: GENCLONE is designed for studying clonality and its spatial components using genotype data with molecular markers from haploid or diploid organisms. What changes from GenClone 1.1 to GenClone 2.0.«Génome, Populations, Interactions »-Université Montpellier II, Place Eugène Bataillon 34090 Montpellier Cedex, FRANCE «Team MAREE» - CCMAR, Algarve University, FCMA, Gambelas, 8005-139 Faro, PORTUGAL GenClone: a computer program to analyze genotypic data, test for clonality and describe spatial clonal organization.
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